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SRX4398925: GSM3288289: mac53-I rep3; Caenorhabditis elegans; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 22.6M spots, 6.8G bases, 2.8Gb downloads

Submitted by: NCBI (GEO)
Study: WDR-23 and SKN-1 Nrf2 coordinate with the BLI-3 dual oxidase in response to iodide-triggered oxidative stress
show Abstracthide Abstract
Excess iodide could lead to larve arrest to C. elegans, we screened for mutants that can survive in excess iodide and identified gain-of-function mutations in skn-1 and loss-of-function mutations in wdr-23 and bli-3. Genetic study uncover that wdr-23(lf) can interact with bli-3 mutations in a manner different from skn-1(gf). Transcriptome studies suggest that excess iodide causes developmental arrest largely independent of changes in gene expression, and wdr-23(lf) could affect the expression of a subset of genes by a mechanism different from SKN-1 activation. Overall design: L1 mRNA profiles of wild type (WT), wdr-23(mac35lf) and skn-1(mac53gf) C. elegans with or without iodide treatment were generated in triplicate.
Sample: mac53-I rep3
SAMN09670238 • SRS3553793 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted using TRIzol (Invitrogen) and chloroform-isopropanol. Libraries were generated using NEBNext® Ultra™ RNA Library Prep Kit for Illumina® (#E7530L, NEB, USA) following the manufacturer's recommendations and index codes were added to attribute sequences to each sample.
Experiment attributes:
GEO Accession: GSM3288289
Links:
Runs: 1 run, 22.6M spots, 6.8G bases, 2.8Gb
Run# of Spots# of BasesSizePublished
SRR753096722,553,6816.8G2.8Gb2018-07-23

ID:
5977127

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